PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000102.1_g00016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 360aa    MW: 38070.3 Da    PI: 7.8087
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000102.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00051174196123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C  Cg++F++   L  H  +H
  Itr_sc000102.1_g00016.1 174 YECRTCGRTFPTFQALGGHRTSH 196
                              99**********99998888777 PP

2zf-C2H214.30.00012253275123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++Cg  Fs+   L  H+r+H
  Itr_sc000102.1_g00016.1 253 HECSYCGAEFSSGQALGGHMRRH 275
                              78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.52E-6172201No hitNo description
PfamPF139121.1E-10173198IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.778174201IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.8E-4174200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.081174196IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
SuperFamilySSF576674.22E-6250280No hitNo description
PfamPF139122.7E-12253276IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.531253280IPR007087Zinc finger, C2H2
SMARTSM003550.01253275IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280255275IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDALEEVAGG PNQQLQDLSH IVKGKRTKRS RSTPHSPISF TMITATTTPP HSPPAGDAAD  60
NAATSAPIPA PPTPEDEDMA RCLMLLSQGG GGFSRHPPPA IPKSPIHKEE EIGGAYNNTG  120
GAWNNNGGAY NNGGGAWNNG GGGGGSKFCS KKYIETTTGG GGGGGGVKVG MYVYECRTCG  180
RTFPTFQALG GHRTSHTKEK APLTTAETGA AKRPLALYDE EDVNPYPFNK APKISSAPYH  240
FYDSANKSSP RIHECSYCGA EFSSGQALGG HMRRHRNSAP AAAASPLSPS SSSLEKRVPQ  300
KEENNGKCLN LDLNLLPAGE ENQDHRRARE LPENQEQQPP PVEPTLFLST TPPLVGCKYI
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.17e-28C2H2 family protein